Publications

For citation metrics check my Google Scholar or  ISI Researcher ID.

Copyright notice: PDFs available for personal and educational use only; any further distribution, publication or commercial usage requires additional permission. Copyright and all rights retained by the authors and journals.

 Publications 
140Siu, G; Philippe Bacchet; Giacomo Bernardi, Andrew J. Brooks, (...), Jeffrey T. Williams, and René Galzin. 2017. Shore Fishes of French Polynesia. Cybium. (in press). PDF
139Bariche, Michel; Periklis Kleitou; Stefanos Kalogirou; and Giacomo Bernardi. 2017. Genetics reveal the identity and origin of the lionfish invasion in the Mediterranean Sea. Scientific Reports. PDF
138Bernardi, Giacomo; Gary Longo; Angela Quiros. 2017. Altrichthys alelia, a new brooding damselfish (Teleostei, Perciformes, Pomacentridae) from Busuanga Island, Philippines. Zookeys 675:45-55 PDF
137Crane, Nicole; Peter Nelson, Avigdor Abelson, Kristin Precoda, John Rulmal Jr, Giacomo Bernardi, Michelle Paddack. 2017. Atoll-scale patterns in coral reef community structure: Human signatures on Ulithi Atoll, Micronesia. PLoS ONE 12(5): e0177083. PDF
136Hamilton, Scott L.; Cheryl A. Logan, Hamilton W. Fennie, Susan M. Sogard, James
P. Barry, April D. Makukhov, Lauren R. Tobosa, Kirsten Boyer, Christopher F. Lovera, Giacomo Bernardi. 2017. Species-Specific Responses of Juvenile Rockfish to Elevated pCO2: From Behavior to Genomics. PLoS ONE 12(1): e0169670. doi:10.1371/journal. pone.0169670
PDF
135Bernardi Giacomo , Nicole L. Crane, Gary C. Longo, and Angela L. Quiros. 2017. The ecology of Altrichthys azurelineatus and A. curatus, two damselfishes that lack a pelagic larval phase. Environmental Biology of Fishes. 100: 111-120 PDF
134O’Donnell, James L. ; Ricardo Beldade; Suzanne C. Mills; Hannah E. Williams;, and Giacomo Bernardi. 2017. Life history, larval dispersal, and connectivity in coral reef fish
among the Scattered Islands of the Mozambique Channel. Coral Reefs. 36: 223-232.
PDF
133Beldade, Ricardo , Sally J. Holbrook, Russell J. Schmitt, Serge Planes, and Giacomo Bernardi. 2016. Spatial patterns of self-recruitment of a coral reef fish in relation to island-scale retention mechanisms. Molecular Ecology. 25: 5203-5211. PDF
132Bernardi, Giacomo; Ernesto Azzurro; Daniel Golani; Michael Ryan Miller. 2016. Genomic signatures of rapid adaptive evolution in the bluespotted cornetfish, a Mediterranean Lessepsian invader. Molecular Ecology 25, 3384–3396. PDF
131Selkoe, Kimberly A.; Oscar E. Gaggiotti; Eric A. Treml; Johanna L. K. Wren; Mary K. Donovan; Kimberly Andrews; Iliana Baums; Moisés A. Bernal; Giacomo Bernardi; Christopher Bird; [...]; Luiz A. Rocha; Joshua Reece; Derek Skillings; Scott R. Santos; Zoltan Szabo; Molly Timmers; Lisa Wedding; Gareth J. Williams; Nicholas M. Whitney; Robert J. Toonen. 2016. The DNA of coral reef biodiversity: predicting and protecting genetic diversity of reef assemblages. Proceedings of the Royal Society B. 283:20160354. PDF
130Crane, Nicole; Michelle Paddack; Peter Nelson; Avigdor Abelson, John Jr. Rulmal; and Giacomo Bernardi. 2016. Corallimorph and Montipora Reefs in Ulithi Atoll, Micronesia: documenting unusual reefs. Journal of the Ocean Science Foundation. 21: 10-17. PDF
129Longo, Gary C., Brendan O'Connell, Richard E. Green, and Giacomo Bernardi. 2016. The complete mitochondrial genome of the black surfperch, Embiotoca jacksoni: selection and substitution rates among surfperches (Embiotocidae). Marine Genomics. 28: 107-112. PDF
128Tenggardjaja Kimberly, Brian W. Bowen and Giacomo Bernardi. 2016. Reef fish dispersal in the Hawaiian Archipelago: comparative phylogeography of three endemic damselfishes. Journal of Marine Biology. 2016: 1-17. Article ID 3251814. PDF
127Pinheiro, Hudson, Giacomo Bernardi, and Luiz Rocha. 2016. Pempheris gasparinii, a new species of sweeper fish from Trindade Island, southwestern Atlantic (Teleostei, Pempheridae). Zookeys. 561: 105-115. PDF
126Tariel, Juliette, Gary C. Longo, and Giacomo Bernardi. 2016. Tempo and mode of speciation in Holacanthus angelfishes based on RADseq markers. Mol. Phylog. Evol. 98: 84-88 PDF
125Johnson, Darren W.; Jan Freiwald, and Giacomo Bernardi. 2016. Genetic diversity affects the strength of population regulation in a marine fish. Ecology 97: 627-639. PDF
124Bariche, Michel; Martha Torres; Colin Smith; Nancy Sayar; Ernesto Azzurro; Ryan Baker, and Giacomo Bernardi. 2015. Red Sea fishes in the Mediterranean Sea: a preliminary investigation of a biological invasion using DNA barcoding. Journal of Biogeography 42: 2363-2373. PDF
123Mills Suzanne, Ricardo Beldade, Pascale Chabanet, Lionel Bigot, James O'Donnell, and Giacomo Bernardi. 2015. Ghosts of thermal past: reef fish exposed to historic high temperatures have higher stress-responsiveness. Coral Reefs 34:1255-1260. PDF
122Longo, Gary, and Giacomo Bernardi. 2015. The evolutionary history of the embiotocid surfperch radiation based on genome-wide RAD sequence data. Molecular Phylogenetics and Evolution. 88: 55-63. PDF
121Jackson Alexis M., Adrian Munguía-Vega, Ricardo Beldade, Brad E. Erisman, and Giacomo Bernardi. 2015. Incorporating historical and ecological genetic data for Leopard grouper
(Mycteroperca rosacea) into marine reserve design in the Gulf of California. Conservation Genetics 16: 811-822.
PDF
120Azzurro Ernesto, Menachem Goren, Ariel Diamant, Bella Galil, and Giacomo Bernardi. 2015. Establishing the identity and assessing the dynamics of invasion in the Mediterranean Sea by the dusky sweeper, Pempheris rhomboidea Kossmann & Räuber, 1877 (Pempheridae, Perciformes). Biological Invasions 17:815–826. PDF
119Poortvliet, Marloes; Jeanine L Olsen; Donald A Croll; Giacomo Bernardi; Kelly Newton; Spyros Kollias; John O'Sullivan; Daniel Fernando; Guy Stevens; Felipe Galván Magaña; Bernard Seret; Sabine Wintner; Galice Hoarau. 2015. A dated molecular phylogeny of manta and devil rays (Mobulidae) based on mitogenome and nuclear sequences. Molecular Phylogenetics and Evolution 83: 72-85. PDF
118Jackson, Alexis M. , Kimberly Tenggardjaja, Gerardo Perez, Ernesto Azzurro, Daniel Golani, and Giacomo Bernardi. 2015. Phylogeography of the bluespotted cornetfish, Fistularia commersonii: A predictor to bioinvasion success? Marine Ecology 36: 887-896. PDF
117Rius Marc, Xavier Turon, Giacomo Bernardi, Filip A.M. Volckaert, Frédérique Viard . 2015. Marine invasion genetics: from spatio-temporal patterns to evolutionary outcomes. Biological Invasions 17:869-885. PDF
116Tenggardjaja, Kimberly A.; Brian W. Bowen; Giacomo Bernardi. 2014. Vertical and horizontal genetic connectivity in Chromis verater, an endemic damselfish found on shallow and mesophotic reefs in the Hawaiian Archipelago and adjacent Johnston Atoll. PLoS ONE 9(12): e115493. doi: 10.1371/journal.pone.0115493 PDF
115Adam, Thomas C., Andrew J. Brooks, Sally J. Holbrook, Russell J. Schmitt, Libe Washburn, and Giacomo Bernardi. 2014. How will coral reef fish communities respond to climate-driven disturbances? Insight from landscape-scale perturbations. Oecologia 176:285–296. PDF
114Bernardi, Giacomo. 2014. Baja California disjunctions and phylogeographic patterns in sympatric California blennies. Frontiers in Ecology and Evolution. 2:53. doi: 10.3389/fevo. 2014.00053 PDF
113Jackson Alexis M. , Brice X. Semmens, Yvonne Sadovy de Mitcheson, Richard S. Nemeth, Scott A. Heppell, Phillippe G. Bush, Alfonso Aguilar-Perera, John A. B. Claydon, Marta C. Calosso, Kathleen S. Sealey, Michelle T. Schärer and Giacomo Bernardi. 2014. Population structure and phylogeography in Nassau grouper (Epinephelus striatus), a mass-aggregating marine fish. Plos One 9 (5) e97508 PDF
112Boero, Fernando, and Giacomo Bernardi. 2014. Phenotypic vs genotypic approaches to biodiversity, from conflict to alliance. Marine Genomics. 17: 63-64. PDF
111Freitas, Rui, Osmar J. Luiz, Pericles N. Silva, Sergio R. Floeter, Giacomo Bernardi, and Carlos E. L. Ferreira. 2014. The occurrence of Sparisoma frondosum (Teleostei: Labridae) in the Cape Verde Archipelago, with a summary of expatriated Brazilian endemic reef fishes. Marine Biodiversity. 44: 173-179 PDF
110Bernardi, Giacomo, Marina Ramon, Yvette Alva-Campbell, John E. McCosker, Giuseppe Bucciarelli, Lauren E. Garske, and Nicole L. Crane. 2014. Darwin’s fishes: phylogeography of Galápagos Islands reef fishes. Bulletin of Marine Science. 90: 533-549. PDF
109von der Heyden, Sophie, Maria Beger, Robert J. Toonen, Lynne van Herwerden, Marie Antonette Juinio-Meñez, Rachel Ravago-Gotanco, Cecile Fauvelot, and Giacomo Bernardi. 2014. The application of genetics to marine management and conservation: examples from the Indo-Pacific. Bulletin of Marine Science 90: 123-158. PDF
108Bowen, Brian W., Kartik Shanker, Nina Yasuda, Maria Celia D Malay, Sophie von der Heyden, Gustav Paulay, Luiz A Rocha, Kimberly A Selkoe, Paul H Barber, Suzanne T Williams, Harilaos A Lessios, Eric D Crandall, Giacomo Bernardi, Christopher P Meyer, Kent E Carpenter, Robert J Toonen. 2014. Phylogeography Unplugged: Comparative surveys in the genomic era. Bulletin of Marine Science. 90:13-46. PDF
107Jackson, Alexis M., Adrian Munguía-Vega, Avian S. Lain, Simon A. Stokes, Aneese J. Williams, and Giacomo Bernardi. 2014. Isolation and characterization of fifteen microsatellite loci in Leopard grouper (Mycteroperca rosacea) via 454 pyrosequencing. Conservation Genetics Resources. 6: 185-187. PDF
106Beldade, Ricardo; Alexis M Jackson; Richard Cudney-Bueno; Peter T. Raimondi; and Giacomo Bernardi. 2014. Genetic structure among spawning aggregations of the Gulf Coney, Hyporthodus acanthistius. Marine Ecology Progress Series 499: 193-201. PDF
105Tenggardjaja, Kimberly, Alexis Jackson, Frank Leon, Ernesto Azzurro, Daniel Golani, and Giacomo Bernardi. 2014. Genetics of a Lessepsian sprinter: the bluespotted cornetfish, Fistularia commersonii. Israel Journal of Ecology and Evolution 59: 181-185. PDF
104Poortvliet, Marloes, Gary C. Longo, Kimberly Selkoe, Paul H. Barber, Crow White, Jennifer E. Caselle, Alejandro Perez-Matus, Steven D. Gaines, and Giacomo Bernardi. 2013. Phylogeography of the California sheephead, Semicossyphus pulcher: the role of deep reefs as stepping stones and pathways to antitropicality. Ecology and Evolution 3: 4558-4571. PDF
103Leichter, James J., Alice L. Alldredge, Giacomo Bernardi, Andrew J. Brooks, Craig A. Carlson, Robert C. Carpenter, Peter J. Edmunds, Melanie R. Fewings, Katharine M. Hanson, Sally J. Holbrook, James L. Hench, Craig E. Nelson, Russell J. Schmitt, Robert J. Toonen, Libe Washburn, and Alex S.J. Wyatt. 2013. Transport and Retention Processes on Moorea, French Polynesia: Biological and Physical Interactions on a Tropical Island Coral Reef. Oceanography. 26: 52-63 PDF
102Bernardi, Giacomo, Ramon Noguchi, Antônio B. Anderson, Sergio R. Floeter, and Carlos Eduardo Leite Ferreira. 2013. Sargo Amarelo, a traditionally recognized hybrid between two species of Brazilian reef fishes. Marine Biodiversity 43:255-256. PDF
101Kober, K.M., and G. Bernardi. 2013. Phylogenomics of strongylocentrotid sea urchins. BMC Evolutionary Biology. 13:88 PDF
100Bernardi, Giacomo. 2013. Speciation in Fishes. Molecular Ecology 22: 5487- 5502. PDF
99von der Heyden, Sophie, Enelge Gildenhuys, Giacomo Bernardi, Rauri C.K. Bowie. 2013. Fine-scale biogeography: tidal elevation strongly affects population genetic structure and demographic history in intertidal fishes. Frontiers of Biogeography. 5: 29-38 PDF
98Byrne, Rosemary, Giacomo Bernardi, and John C. Avise. 2013. Spatio-temporal genetic structure in a protected marine fish, the California grunion (Leuresthes tenuis), and relatedness in the genus Leuresthes. Journal of Heredity. 104: 521-531 PDF
97Levy, Andre, von der Heyden, Sophie, Floeter, Sergio R., Bernardi, Giacomo; Almada, Vitor C. 2013. Phylogeny of Parablennius Miranda Ribeiro, 1915 reveals a paraphyletic genus and recent Indo-Pacific diversification from an Atlantic ancestor. Mol. Phylog. Evol. 67:1-8 PDF
96Fricke, R. Durville, P., Bernardi, G., Borsa, P., Mou-Tham, G., and P. Chabanet. 2013. Checklist of the shore fishes of Europa Island, Mozambique Channel, southwestern Indian Ocean, including 302 new records. Stuttgarter Beiträge zur Naturkunde A, Neue Serie 6: 247-276. PDF
95Bernardi G, Beldade R, Holbrook SJ, Schmitt RJ. 2012. Full-Sibs in Cohorts of Newly Settled Coral Reef Fishes. PLoS ONE 7(9): e44953. doi:10.1371/ journal.pone.0044953 PDF
94Ben-Tzvi O, Abelson A, Gaines SD, Bernardi G, Beldade R, Sheehy MS, Paradis GL, Kiflawi M. 2012. Evidence for Cohesive Dispersal in the Sea. PLoS ONE 7(9): e42672. doi:10.1371/ journal.pone.0042672 PDF
93Beldade, Ricardo, Christy A Bell, Peter T Raimondi, Maya George, Melissa Miner, and Giacomo Bernardi. 2012. Isolation and characterization of 8 novel microsatellites for the black abalone, Haliotis cracherodii, a marine gastropod decimated by the withering disease. Conservation Genetics Resources 4:1071–1073. PDF
92Bernardi, Giacomo. 2012. Fifty-Year Old and Still Ticking.... An Interview with Emile Zuckerkandl on the 50th Anniversary of the Molecular Clock. J. Mol. Evol. 74: 233-236 PDF
91Jackson, A.M., Semmens, B. X. and G. Bernardi. 2012. Characterization and cross-species amplification of microsatellite markers in Nassau grouper (Epinephelus striatus). Molecular Ecology Resources 12(5): 972 - 974. PDF
90Tavera JJ, Acero A, Balart EF, and Bernardi G. 2012. Molecular phylogeny of grunts (Teleostei, Haemulidae), with an emphasis on the ecology, evolution, and speciation history of New World species. BMC Evolutionary Biology 12: 57. PDF
89Bernardi G., E. O. Wiley, H. Mansour, M. R. Miller, G. Orti, D. Haussler, S. J. OBrien, O. A. Ryder, and B. Venkatesh. 2012. The fishes of Genome 10K. Marine Genomics. 7: 3-6 PDF
88Zahuranec, Bernard, P.K. Karuppasamy , Tooraj Valinassab, Samina Kidwai, Jeremy Bernardi, and Giacomo Bernardi. 2012. Cryptic speciation in the mesopelagic environment: Molecular phylogenetics of the lanternfish genus Benthosema. Marine Genomics. 7:7-10 PDF
87Golani D., and G. Bernardi. 2012. Differential invading potential among cryptic species of blotchfin dragonet, Callionymus filamentosus, a Lessepsian bioinvader. Mar. Ecol. Prog. Ser. 450: 159-166. PDF
86Beldade R., S.J. Holbrook, R.J. Schmitt, S. Planes, D. Malone, and G. Bernardi. 2012. Larger female fish contribute disproportionately more to self-replenishment. Proc.Roy. Soc. London 279: 2116-2121. PDF
85Lessios, H.A., S. Lockhart, R. Collin, G. Sotil, P. Sanchez-Jerez, K.S. Zigler, A.F. Perez, M.J. Garrido, L.B. Geyer, G. Bernardi, V.D. Vacquier, R. Haroun, and B.D. Kessing. 2012. Phylogeography and bindin evolution in Arbacia, a sea urchin genus with an unusual distribution. Molecular Ecology 21: 130-144. PDF
84Bernardi, G. 2012.The use of tools by wrasses (Labridae). Coral Reefs 31: 39-39. PDF
83Adam, Thomas, A., Russell J. Schmitt, Sally J. Holbrook, Andrew J. Brooks, Peter J. Edmunds, Robert C. Carpenter, Giacomo Bernardi. 2011. Herbivory, Connectivity, and Ecosystem Resilience: Response of a Coral Reef to a Large-Scale Perturbation. PLoS ONE 6(8): e23717. doi:10.1371/journal.pone.0023717 PDF
82von der Heyden, Sophie, Rauri C.K. Bowie, Kim Prochazka, Paulette Bloomer, Nicole L. Crane, and Giacomo Bernardi. 2011. Phylogeographic patterns and cryptic speciation across oceanographic barriers in South African intertidal fishes. Journal of Evolutionary Biology 24: 2505-2519. PDF
81Burford, Martha O., Mark H. Carr, and Giacomo Bernardi. 2011. Age-structured analysis of the genetic structure of blue rockfish (Sebastes mystinus) reveals temporal and geographic variation within and between cryptic species. Marine Ecology Progress Series 442: 201-215. PDF
80Poortvliet, M, Galvan-Magana, F, Bernardi, G, Croll, DA, Olsen, JL. 2011. Isolation and characterization of twelve microsatellite loci for the Japanese Devilray (Mobula japanica). Conservation Genetics Resources. 3:733-735. PDF
79Burford, Martha O., Giacomo Bernardi, and Mark H. Carr. 2011. Analysis of individual year-classes of a marine fish reveals little evidence of first-generation hybrids between cryptic species in sympatric regions. Marine Biology 158: 1815-1827. PDF
78Bernardi, G. 2011. Monophyletic origin of brood care in damselfishes. Molecular Phylogenetics and Evolution 59: 245-248. PDF
77Longo, Gary, Ricardo Beldade, Richard Cudney-Bueno, Pete Raimondi, and Giacomo Bernardi. 2011. Isolation and characterization of 13 polymorphic microsatellites for the black murex, Hexaplex nigritus . Marine Genomics 4: 69-70. PDF
76Reyes-Valdez, Claudia Alejandra , Gorgonio Ruiz-Campos, Faustino Camarena-Rosales, Jose Luis Castro-Aguirre, and Giacomo Bernardi. 2011. Population morphometric variation of the endemic freshwater killifish, Fundulus lima (Teleostei: Fundulidae), and comparison with its coastal relatives (F. parvipinnis sspp.) from the Baja California Peninsula, Mexico. Reviews in Fish Biology and Fisheries . 21:543-558. PDF
75Alva-Campbell, Yvette, Sergio Floeter, D. Ross Robertson, David Bellwood, and Giacomo Bernardi. 2010. Molecular phylogenetics and evolution of Holacanthus angelfishes (Pomacanthidae). Molecular Phylogenetics and Evolution 56: 456-461. PDF
74Leray, Matthieu, Ricardo Beldade, Sally J. Holbrook, Russell J. Schmitt, Serge Planes, and Giacomo Bernardi. 2010. Allopatric divergence and speciation in coral reef fish: the three-spot dascyllus, Dascyllus trimaculatus, species complex. Evolution 64: 1218-1230. PDF
73Crow, Karen, Hiroyuki Munehara, and Giacomo Bernardi. 2010. Sympatric speciation in a genus of marine reef fishes. Molecular Ecology 19: 2089-2105. PDF
72Schinske, Jeffrey N., Giacomo Bernardi, David K. Jacobs, and Eric J. Routman. 2010. Phylogeography of the diamond turbot (Hypsopsetta guttulata) across the Baja California Peninsula. Marine Biology 157: 123-134. PDF
71Genome 10K community of scientists. 2009. Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species. Journal of Heredity 100: 659-674. PDF
70Beldade, Ricardo, Sally J. Holbrook, Russell J. Schmitt, Serge Planes, and Giacomo Bernardi. 2009. Isolation and characterization of 8 polymorphic microsatellite markers from the orange-fin anemone fish, Amphiprion chrysopterus. Conservation Genetics Resources 1: 333-335. PDF
69Bariche, Michel, and Giacomo Bernardi. 2009. Lack of a genetic bottleneck in a recent Lessepsian bioinvader, the blue-barred parrotfish, Scarus ghobban. Molecular Phylogenetics and Evolution 53: 592-595. PDF
68Beldade, Ricardo, Peter Raimondi, Richard Cudney-Bueno, and Giacomo Bernardi. 2009. Isolation and characterization of 13 polymorphic microsatellite markers from the Gulf coney, Epinephelus acanthistius. Molecular Ecology Resources 9: 1375-1429. PDF
67Robalo, Joana, Vitor C. Almada, Andre Levy, Jorg Freyhof, Giacomo Bernardi, Ignacio Doadrio. 2009. Phylogenetic analysis of Peri-Mediterranean blennies of the genus Salaria: molecular insights on the colonization of freshwaters. Molecular Phylogenetics and Evolution 52: 424-431. PDF
66Bucciarelli, Giuseppe, Miriam Di Filippo, Domenico Costagliola, Fernando Alvarez-Valin, Giacomo Bernardi, and Giorgio Bernardi. 2009. Environmental genomics: a tale of two fishes. Molecular Biology and Evolution 26: 1235-1243. PDF
65Vagelli, Alejandro, Martha Burford, and Giacomo Bernardi. 2009. Fine scale dispersal in Banggai Cardinalfish, Pterapogon kauderni, a coral reef species lacking a pelagic larval phase. Marine Genomics 1: 129-134 PDF
64Reisser, Celine, Ricardo Beldade, and Giacomo Bernardi. 2009. Multiple paternity and competition in sympatric congeneric reef fishes, Embiotoca jacksoni and E. lateralis. Molecular Ecology 18, 1504-1510 PDF
63Beldade, Ricardo, J. B. Heiser, D. Ross Robertson, Joao L. Gasparini, Sergio Floeter and Giacomo Bernardi. 2009. Historical Biogeography and speciation in the Creole wrasses (Labridae, Clepticus). Marine Biology 156: 679-687 PDF
62Bernardi, G. 2009. The name of the Father: Conflict between Louis and Alexander Agassiz, and the Embiotoca surfperch radiation. Journal of Fish Biology 74: 1049-1055. PDF
61Freiwald, Jan, Nathan L. Stewart, Devona C. Yates, and Giacomo Bernardi. 2009. Isolation and characterization of nine polymorphic microsatellite loci of the kelp greenling, Hexagrammos decagrammus, a temperate reef fish. Molecular Ecology Resources 9: 563-565. PDF
60Poortvliet, Marloes, Jeanine L. Olsen, Kimberly A. Selkoe, James A. Coyer, Giacomo Bernardi. 2009. Isolation and characterization of 11 microsatellite primers for a temperate reef fish, the California sheephead (Semicossyphus pulcher). Molecular Ecology Resources 9: 429-430 PDF
59Leray, Matthieu, Ricardo Beldade, Sally J. Holbrook, Russell J. Schmitt, Serge Planes, and Giacomo Bernardi. 2009. Isolation and characterization of 13 polymorphic nuclear microsatellite primers for the widespread Indo-Pacific three-spot damselfish, Dascyllus trimaculatus, and closely related D. auripinnis. Molecular Ecology Resources 9: 213-215 PDF
58Bernardi, G. 2008. Isolation and characterization of 12 microsatellites from the black surfperch, Embiotoca jacksoni, a reef fish that lacks a pelagic larval phase. Molecular Ecology Resources 8: 1512-1514. PDF
57Bernardi, Giacomo, Yvette R. Alva-Campbell, Joao L. Gasparini, Sergio R. Floeter. 2008. Molecular ecology, speciation, and evolution of the reef fish genus Anisotremus. Molecular Phylogenetics and Evolution 48: 929-935. PDF
56Burford, Martha O., and Giacomo Bernardi. 2008. Incipient speciation within a subgenus of rockfish (Sebastosomus) provides evidence of recent radiations within an ancient species flock. Marine Biology 154: 701-717. PDF
55Domingues, Vera S., Markos Alexandrou, Vitor C. Almada, D. Ross Robertson, Alberto Brito, Ricardo S. Santos, and Giacomo Bernardi 2008. Tropical fishes in a temperate sea: evolution of the wrasse Thalassoma pavo and the parrotfish Sparisoma cretense in the Mediterranean and the adjacent Macaronesian and Cape Verde Archipelagos. Marine Biology 154: 465-474. PDF
54Zvuloni, A., O. Mokady, M. Al-Zibdah, G. Bernardi, S.D. Gaines and A. Abelson 2008. Local scale genetic structure in coral populations: A signature of selection. Marine Pollution Bulletin 56: 430-438. PDF
53Ramon, Marina, Peter Nelson, Edward DeMartini, William Walsh, and Giacomo Bernardi 2008. Phylogeography, historical demography, and the role of post-settlement ecology in two Hawaiian damselfish species. Marine Biology 153: 1207-1217. PDF
52Floeter, S.R., L.A. Rocha, D.R. Robertson, J.C. Joyeux, W. Smith-Vaniz, P. Wirtz, A.J. Edwards, J.P. Barreiros, C.E.L. Ferreira, J.L. Gasparini, A. Brito, J.M. Falcon, B.W. Bowen, and G. Bernardi 2008. Atlantic reef fish biogeography and evolution . Journal of Biogeography 35: 22-47. PDF
51Golani, Daniel, Ernesto Azzurro, Maria Corsini-Foka, Manuela Falautano, Franco Andaloro, and Giacomo Bernardi. 2007. Genetic bottlenecks and successful biological invasions: the case of a recent Lessepsian migrant. Biology Letters. 3: 541-545. PDF
50Crow, Karen D., Hiroyuki Munehara, Ziyusei Kanamoto, Andrey Balanov, Dmitriy Antonenko, and Giacomo Bernardi. 2007. Maintenance of species boundaries despite rampant hybridization between three species of reef fishes (Hexagrammidae): implications for the role of selection. Biological Journal of the Linnnean Society. 91: 135-147. PDF
49Bernardi G, Ruiz-Campos G, Camarena-Rosales F. 2007. Genetic isolation and evolutionary history of oases populations of the Baja California killifish, Fundulus lima. Conservation Genetics 8: 547-554. PDF
48Domingues VS, Almada VC, Santos RS, and Bernardi G. 2007. Phylogeography and evolution of the triplefin Tripterygion delaisi (Pisces, Blennioidei). Marine Biology 150: 509-519. PDF
47Robertson DR, Karg F, de Moura RL, Victor BC, and Bernardi G. 2006. Mechanisms of speciation and faunal enrichment in Atlantic parrotfishes. Molecular Phylogenetics and Evolution 40: 795-807 PDF
46Azzurro, E., D. Golani, G. Bucciarelli, and G. Bernardi. 2006. Genetics of the early stages of invasion of the Lessepsian rabbitfish Siganus luridus. Journal of Experimental Marine Biology and Ecology 333: 190-201. PDF
45Bernardi, G. and J. Lape. 2005. Tempo and mode of speciation in the Baja California disjunct fish species Anisotremus davidsonii. Molecular Ecology 14: 4085-4096. PDF
44Domingues, V., G. Bucciarelli, V.C. Almada, and G. Bernardi. 2005. Historical colonization and demography of the Mediterranean damselfish, Chromis chromis. Molecular Ecology 14: 4051-4063. PDF
43Bernardi, G. 2005. Phylogeography and demography of sympatric sister species, Embiotoca jacksoni and E. lateralis along the California coast: Historical versus ecological factors. Evolution 59 386-394. PDF
42Bernardi, G., and Vagelli, A. 2004. Population structure in Banggai Cardinalfish, Pterapogon kauderni, a coral reef fish lacking a pelagic larval phase. Marine Biology 145: 803-810. PDF
41Crow, K.D., Kanamoto, Z., and Bernardi, G. 2004. Molecular phylogeny of the hexagrammid fishes using a multi-locus approach. Molecular Phylogenetics and Evolution 32: 986-997. PDF
40Bernardi, G., Bucciarelli, G., Costagliola, D., Robertson, D.R., and Heiser, J.B. 2004. Evolution of coral reef fish Thalassoma spp. (Labridae): 1. Molecular phylogeny and biogeography. Marine Biology 144: 369-375 PDF
39Costagliola, D., Robertson, D.R., Guidetti, P., Stefanni, S., Wirtz, P., Heiser, J.B., and Bernardi, G. 2004. Evolution of the coral reef fish Thalassoma spp. (Labridae): 2. Evolution of the eastern Atlantic species. Marine Biology 144: 377-383 PDF
38Bernardi, G., Holbrook, S.J., Schmitt, R.J., and Crane, N.L. 2003. Genetic evidence for two distinct clades in a French Polynesian population of the coral reef three-spot damselfish Dascyllus trimaculatus. Marine Biology 143: 485-490 PDF
37Bernardi, G., Findley, L., and Rocha-Olivares, A. 2003. Vicariance and dispersal across Baja California in disjunct marine fish populations. Evolution 57:1599-1609. PDF
36Fauvelot, C., Bernardi, G., and Planes, S. 2003. Reductions in the mitochondrial DNA diversity of coral reef fish provide evidence of population bottlenecks resulting from Holocene sea-level change Evolution 57:1571-1583. PDF
35Bucciarelli, G., Bernardi, Giacomo. and Bernardi, Giorgio. 2002. An ultracentrifugation analysis of two hundred fish genomes. Gene 295: 153-162. PDF
34Jones W.J., Quelvog, BD., and Bernardi, G. 2002. Morphological and genetic analysis of the Red Hills roach (Cyprinidae: Lavinia symmetricus). Conservation Genetics 3 (3): 261-276, 2002 PDF
33Bucciarelli, G., Golani, D., and Bernardi, G. 2002. Genetic cryptic species as biological invaders: The case of a Lessepsian fish migrant, the hardyhead silverside Atherinomorus lacunosus. J. Exp. Mar. Biol. Ecol 273:143-149. PDF
32Bernardi, G., Holbrook, S.J., Schmitt, R.J., Crane, N.L., and DeMartini, E. 2002. Species boundaries, populations, and colour morphs in the coral reef three-spot damselfish (Dascyllus trimaculatus) species-complex. Proc.Roy. Soc. London 269:599-605. PDF
31Planes, S., Doherty, P., and Bernardi, G. 2001. Unusual case of extreme genetic divergence in a marine fish, Acanthochromis polyacanthus, within the Great Barrier Reef and the Coral Sea. Evolution 55:2263-2273 PDF
30Bernardi G., Holbrook S. J., and Schmitt R. J. 2001. Dispersal of the coral reef three-spot dascyllus,Dascyllus trimaculatus, at three spatial scales. Mar. Biol. 138:457-465. PDF
29Huang, D., and Bernardi, G. 2001. Disjunct Sea of Cortez - Pacific Ocean Gillichthys mirabilis populations and the evolutionary origin of their paedomorphic relative, Gillichthys seta. Mar. Biol. 138:421-428. PDF
28Bernardi, G., and Talley, D. 2000. Molecular evidence for reduced dispersal in the coastal California killifish, Fundulus parvipinnis. J. Exp. Mar. Biol. Ecol. 255:187-199. PDF
27Bernardi, G., Robertson, R., Clifton, K. and Azzuro, E. 2000. Molecular Systematics, Zoography, and Evolutionary Ecology of the Atlantic Parrotfish genus Sparisoma. Mol. Phylo. Evol. 15:292-300. PDF
26Terry, A., Bucciarelli, G. and Bernardi, G. 2000. Restricted Gene Flow and Incipient Speciation in Disjunct Pacific Ocean and Sea of Cortez Populations of a Reef Fish Species, Girella nigricans. Evolution 54:652-659. PDF
25Bernardi, G. 2000. Barriers to gene flow in Embiotoca jacksoni, a marine fish lacking a pelagic larval stage. Evolution 54:226-237. PDF
24Alesandrini, S. and Bernardi, G. 1999. Ancient species flocks and recent speciation events: What can rockfishes teach us about cichlids (and vice-versa)? J. Mol. Evol. 49:814-818. PDF
23Bernardi, G. and Bucciarelli, G. 1999. Molecular phylogeny and speciation of the surfperches (Embiotocidae, Perciformes). Mol. Phylo. Evol. 13:77-81. PDF
22Bernardi, G. and Crane, N. 1999. Molecular phylogeny of the Humbug Damselfishes inferred from mtDNA sequences. J. Fish Biology 54:1210-1217. PDF
21Bernardi, G., Fain, S.R., Gallo-Reynoso, J.P., Figueroa-Carranza, A.L. and LeBoeuf, B.J. 1998. Genetic Variability in Guadalupe fur seals. Journal of Heredity 89:301-305. PDF
20Bernardi, G. and Goswami, U. 1997. Molecular evidence for cryptic species among the Antarctic fish Trematomus bernacchii and Trematomus hansoni. Antarctic Science 9:381-385. PDF
19Crow, K., Powers, D.A. and Bernardi, G. 1997. Evidence for multiple maternal contributors in nests of kelp greenling (Hexagrammos decagrammus, Hexagrammidae). Copeia 1997:9-15. PDF
18Bernardi, G., Fernandez-Delgado, C., Gomez-Chiarri, M. and Powers, D.A. 1995. Origin of a Spanish population of Fundulus heteroclitus inferred by Cytochrome b sequence analysis. Journal of Fish Biology 47:737-740. PDF
17Bernardi, G. and Powers, D.A. 1995. Phylogenetic relationships among nine species from the genus Fundulus (Cyprinodontiformes, Fundulidae) inferred from sequences of the cytochrome b gene. Copeia 1995:469-473. PDF
16Zoubak, S., D Onofrio G., Caccio', S, Bernardi, Giacomo and Bernardi, Giorgio. 1995. Specific compositional patterns of synonymous positions in homologous mammalian genes. Journal of Molecular Evolution 40:293-307. PDF
15Ben-Miled L., Dellagi K., Bernardi, G., Melrose, T.M., Darghouth, M., Bouattour, A., Kinnaird, J., Shiels, B., Tait, A. and Brown, C.G.D. 1994. Genomic and phenotypic diversity of Tunisian Theileria annulata isolates. Parasitology 51-60. PDF
14Isacchi, A., Bernardi, Giacomo and Bernardi, Giorgio. 1993. Compositional compartmentalization of the nuclear genome of Trypanosoma brucei and Trypanosoma equiperdum. FEBS Letters 181-183. PDF
13Bernardi, Giacomo , D Onofrio, G., Caccio', S. and Bernardi, Giorgio. 1993. Molecular phylogeny of the bony fishes, based on the amino acid sequence of the growth hormone. Journal of Molecular Evolution 37:644-649. PDF
12Bernardi, G., Sordino, P. and Powers, D.A. 1993. Concordant mitochondrial and nuclear DNA phylogenies for populations of the teleost fish Fundulus heteroclitus. Proceedings of the National Academy of Sciences, USA 90:9271-9274. PDF
11Bernardi, G., Sordino, P. and Powers, D.A. 1992. Nucleotide sequence of the 18S Ribosomal Ribonucleic Acid gene from two teleosts and two sharks and their Molecular Phylogeny. Molecular Marine Biology and Biotechnology 1:187-194. PDF
10Bernardi, G. and Powers, D.A. 1992. Molecular phylogeny of the prickly shark Echinorhinus cookei based on a nuclear (18S rRNA), and a mitochondrial (cytochrome b) gene. Molecular Phylogenetics and Evolution 1:161-167. PDF
9Bernardi, Giacomo and Bernardi, Giorgio. 1991. Compositional properties of nuclear genes from cold-blooded vertebrates. Journal of Molecular Evolution 33:57-67. PDF
8Bernardi, Giacomo and Bernardi, Giorgio. 1990. Compositional patterns in the nuclear genome of cold-blooded vertebrates. Journal of Molecular Evolution 31:265-281. PDF
7Bernardi, Giacomo and Bernardi, Giorgio. 1990. Compositional transitions in the nuclear genome of cold-blooded vertebrates. Journal of Molecular Evolution 31:282-293. PDF
6Guizani I., Van Eys, G., Bernardi, G., Kroon, N., Schoone, G.J., Ben-Isma_l, R. and Dellagi, K. 1990. Selection of Leishmania major nuclear DNA probes for the characterization of Leishmania strains: Application on Tunisian isolates. Bull. Soc Fr. Parasitol. 8:39. PDF
5Medrano, L., Bernardi, Giacomo, Couturier, J., Dutrillaux, B. and Bernardi, Giorgio. 1988. Chromosome banding and genome compartmentalization in fishes. Chromosoma 96:178-183. PDF
4Bernardi, Giorgio, Mouchiroud, D., Gautier, C. and Bernardi, Giacomo. 1988. Compositional patterns in vertebrate genomes: conservation and change in evolution. Journal of Molecular Evolution 28:7-18. PDF
3Bernardi, Giorgio and Bernardi, Giacomo. 1986. Compositional constraints and genome evolution. Journal of Molecular Evolution 24:1-11. PDF
2Bernardi, Giacomo, Pizon, V., Cuny, G., Haschemeyer, A. and Bernardi, Giorgio. 1986. ADN et taxonomie des poissons. Oceanis 12:377-380. PDF
1Bernardi, Giacomo and Bernardi, Giorgio. 1985. Codon usage and genome composition . Journal of Molecular Evolution 22:363-365. PDF
Book Chapters
8Eble, J., B. Bowen, G. Bernardi. 2015. Phylogeography of coral reef fishes. In: Ecology of Fishes on Coral Reefs. Camilo Mora Ed. Cambridge University Press. PDF
7Sebens, Kenneth P., Giacomo Bernardi, Mark R. Patterson, and Deron Burkepile. 2013. Saturation Diving and Underwater Laboratories: How Underwater Technology Has Aided Research on Coral Biology and Reef Ecology. In: Research and Discoveries. The Revolution of Science through Scuba. Eds: Michael A. Lang, Roberta L. Marinelli, Susan J. Roberts, and Phillip R. Taylor. pp: 39-52 PDF
6Giacomo Bernardi, Daniel Golani, and Ernesto Azzurro 2010. The genetics of Lessepsian bioinvasions. In: Fish invasions of the Mediterranean Sea: Change and renewal. D. Golani and B. Applebaum-Golani Eds. pp: 71-84. PDF
5Dawson M., R. Waples, and Bernardi G. 2006. Phylogeography. In The Ecology of Marine Fishes: California and Adjacent Waters - UC Press Larry G. Allen, Daniel J. Pondella, II, and Michael H. Horn Eds. PDF
4Bernardi, G. 1997. Molecular phylogeny of the Fundulidae (Teleostei, Cyprinodontiformes) based on the cytochrome b gene. In: Molecular Systematics of Fishes. T. Kocher and C. Stepien, eds. Academic Press, San Diego, CA; pp.189-197. PDF
3Powers, D.A., Smith M., Gonzales-Villasenor I., DiMichele L., Crawford D., Bernardi G., and Lauerman T. 1993. A multidisciplinary approach to the selectionist/neutralist controversy using the model teleost Fundulus heteroclitus. In: Oxford Surveys in Evolutionary Biology, Volume 9. D. Futuyama and J. Antonovics, eds. Oxford University Press, Oxford, England; pp. 43-107. PDF
2Bernardi, Giorgio, and Bernardi, Giacomo. 1989. Randomness and natural selection in genome evolution. In: Molecules in Physics, Chemistry, and Biology, IV. Jean Maruani, ed. Kluwer Academic Pubs., Norwell, MA; pp. 3-12. PDF
1Bernardi, Giorgio and Bernardi, Giacomo. 1987. The role of chance in genome evolution. In: From Enzyme Adaptation to Natural Philosophy : Heritage from Jacques Monod. E. Quagliariello, G. Bernardi, and A. Ullmann, eds. Elsevier, Amsterdam, Holland; pp. 173-185. PDF
Book Reviews
4Bernardi, G. 2010. The making of a Biogeographer: The life of Jack Briggs. Frontiers of Biogeography. 2: 9-10. PDF
3Bernardi, G. 2003. Meselson, Stahl, and the Replication of DNA. by FL Holmes. Book Review. The Quarterly Review of Biology 78: 81-82. PDF
2Bernardi, G. 1995. Molecular Biology Frontiers. Biochemistry and Molecular Biology of Fishes. Vol. 2. by P.W. Hochachka, and T.P. Mommsen. Book Review. Copeia 1995:505-506. PDF
1Bernardi, G. 1994. Unraveling DNA. by Maxim D. Frank-Kamenetskii. Book Review. The Quarterly Review of Biology 69:513. PDF
Other Publications
5Bernardi, G. 2012. Atlantic fishes as a model for the study of biogeography and phylogeograhy. Frontiers of Biogeography. 3.4.:137- 139. PDF
4Martha Burford, Mark Carr, and G Bernardi. Speciation and Genetic Structure in a Marine Fish with an Extended Pelagic Larval Phase: an Analysis of Both the Juvenile and Adult Populations of Blue Rockfish (Sebastes mystinus). Coastal Environmental Quality Initiative. Paper 039. _http://repositories.cdlib.org/ucmarine/ceqi/039. PDF
3Bernardi, G. In: Stefanni, Bried and Bettencourt Eds. 2004. Use of Molecular markers for the study of Marine Biodiversity. Acta of the 1st International Workshop in Marine Molecular Phylogenetics. PDF
2Bernardi, G and DeVries, A.L. 1994. Cytochrome b gene sequences from two eelpouts (perciformes, zoarcidae) from McMurdo Sound (Antarctica): Implications on the antifreeze gene structure. Antarctic Journal 29:159-161. PDF
1Bernardi, Giorgio and Bernardi, Giacomo. 1986. The Human genome and its evolutionary context . Cold Spring Harbor Symp. Quant. Biol. "Molecular Biology of Homo sapiens " 51: 479-487. PDF
Miscellaneous
Sympatric speciation 2006. Science now.
Good Karma in Tropical Paradise 2004. NPR - Jesse Kalisher.

Recent Posts